C11 : Hidden Loops in Cancer: Persistent Homology Framework for PDAC Transcriptional State Discovery


Students Siqi Tan
School HDSB - Iroquois Ridge High School - Oakville
Level Intermediate 9/10 - Grade 10
Group Group 12 - Health Science IV
Abstract Pancreatic ductal adenocarcinoma (PDAC) is one of the deadliest cancers, with a five-year survival rate below 12%. Its aggressive progression is driven by complex cellular dynamics that conventional computational models oversimplify by imposing tree-like or linear trajectory assumptions. To address this limitation, this project developed a persistent homology-guided pseudotime framework using topological data analysis to detect nonlinear and cyclic gene expression patterns missed by conventional methods.